HaploView

HaploView

Free
Haploview is designed to simplify & expedite the process of haplotype analysis
1.0  (2 votes)
1.9
Check the report.

Haploview is designed to simplify and expedite the process of haplotype analysis by providing a common interface to several tasks relating to such analyses.
Haploview is fully compatible with data dumps from the HapMap project and the Perlegen Genotype Browser. It can analyze thousands of SNPs (tens of thousands in command line mode) in thousands of individuals.

Haploview currently supports the following functionalities: LD & haplotype block analysis, haplotype population frequency estimation, single SNP and haplotype association tests, permutation testing for association significance, implementation of Paul de Bakker's Tagger tag SNP selection algorithm and automatic download of phased genotype data from HapMap.
* visualization and plotting of PLINK whole genome association results including advanced filtering options

Related stories

See all
Meet Never10, a better way to block off Windows 10 upgrades
Meet Never10, a better way to block off Windows 10 upgrades
Microsoft may be working on its own ad blocker for Edge
Microsoft may be working on its own ad blocker for Edge
The Edge web browser will turn on notifications by default
The Edge web browser will turn on notifications by default
Facebook wants to block ad-blockers, but can it?
Facebook wants to block ad-blockers, but can it?
Facebook may soon allow you to block the "upsetting" ads
Facebook may soon allow you to block the "upsetting" ads
Thank you for rating the program!
Please add a comment explaining the reasoning behind your vote.
0 comments
Your vote:

Latest stories

See all
Lavabit, the secure email service used by Snowden, is back
Lavabit, the secure email service used by Snowden, is back
ProtonMail can now be used through Tor
ProtonMail can now be used through Tor
Gmail users, watch out for this phishing scheme!
Gmail users, watch out for this phishing scheme!
Microsoft may start selling eBooks
Microsoft may start selling eBooks
Samsung concludes that Galaxy Note 7's battery is to blame
Samsung concludes that Galaxy Note 7's battery is to blame
Info updated on: